Scaffold Ga0072682_112736

Overview

Basic Information

• Taxon OID: 3300005099
• Scaffold ID: Ga0072682_112736
• Source Dataset Name: Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10462
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location

• Location Name: Guaymas Basin
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F016098	Metagenome	249	Y
F028993	Metagenome	189	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0072682_11273615	F009582	AGAAGG	MPARRGRREFIGGTGRAVKEARVDVILQRVNEKIGSELDVSPSHIYRYGVNNIFQRAFAYLLGWKTNGEPQKIAVTESGLVKVGISGAGFEEIDVLKGTATADWSDTLEFAWVPNRIRFEAVDYPYIAKFSKDNVTWSEEIYVDGETPRDFDICARYIKVRRYGGTDATYWIIGMR*
Ga0072682_11273618	F028993	AGG	MADIVEKAVKKRKERIAVSEAYYREGVEAPSKDWLEQFKKAKDRRNAGLRRAIEEGLFEKGAERVGTDGWKKATLAKADRWLTGATSAEAEENYASAMRDVAECIERARKAVEGMPTTTIEQRAEKSKRFQIEMAKCMEAKKRGR*
Ga0072682_1127367	F016098	AGGAGG	MSEERRYVYMRKTQSGNGVRIRDGEIVYIASIRSLEQFLRGEREFVAFAKMPYRQIPEEERDRDYVYTYCEKCEGLRFFRKIGEDKWKCQTCGTEKTAWELINKLRGILECD*