Scaffold Ga0072682

Basic Information
Taxon OID	3300005099 Open in IMG/M
Scaffold ID	Ga0072682_112735 Open in IMG/M
Source Dataset Name	Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005099 Open in IMG/M

Scaffold ID

Ga0072682_112735 Open in IMG/M

Source Dataset Name

Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10835
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (94.74%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

10835

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (94.74%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location Name	Guaymas Basin
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Guaymas Basin

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F016098	Metagenome	249	Y
F016235	Metagenome	248	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N
F028993	Metagenome	189	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0072682_1127351	F028993	AGGTGG	MVDIVEKAVKKRKERIAVSEAYYREGVEAPSKDWLEQFKKAKDRRNAGLRRAIEEGLFEKGAERVGTDGWKRATLAKADRWLTGATSAEAEENYASAMRDVAECIDRARKAVEGMPTTTIEQRAEKSKRFQIEMSKCMEAKKRGR*
Ga0072682_11273512	F016098	AGGAGG	MSEERKFVYMRKTQSGQGVKMRDGEIVYIASIRSLEAFLQGEREFVAFARMPYRQIPNENNERNLTYTWCDKCQGLRFFRKISENKWRCEMCGTERTATELIEKVRSIMGVD*
Ga0072682_11273514	F024940	AGAAGG	MEREIIHKKIRSIKELREFITNCLIEHSEMRTKAMLSQNTFVIAYEQGFLDALKTIRDLLSKEGLLMYRYIINEEEERAEDKNRDTF*
Ga0072682_11273517	F016235	AGGAGG	MSKVQISSSPPLFPHRRRMYRKGYQKCVSYVGLDYNDNYFGQGFPLCAVIKFKRPIYRYTPRTSEIAKLLATLRILYGDIYMEELNALAEEEYEKLRRDLKWLITSGDDSD*
Ga0072682_11273518	F024941	AGGAGG	MAYYFWGRLGLTKGEEYRQLLERAWNLGWSQRRFFREARARGLGYAEKLMREDWHRFGYVETARTYSGKLTQHVFFDEVVKKLHDEQGWSWKEIKEFLNERKQPERWTPETKVKERIYKSYLKEALPEKADT*
Ga0072682_1127353	F011723	AGG	MIYNKGLSRDNSTDEGKEIFSLTSKEEEKYKVRRIVITDVMTNPLIMEIWVERDRIGENIPLEVAADIAPERVIDIDAEIPVGYTFSIRIKPQSSGNQGSVRGWVEYEVVG*
Ga0072682_1127354	F009582	AGAAGG	MVRKRGRREFIGGTGREVKEARVDVILQRVNEKIGSELDVSPSHIFRYGVNNIFQRTFAYLLGWKTNGEPQKIAVTEGGLLKVGIAGAGFEEIDVLKGTADVNWSAVLEFDFIPNRIRFESLDYPYVAMFSKDNVKWSEEIYVDEGTPRDYDICAKYIKVRRYGGTDAQYWIVGMR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0072682_112735

Overview

Ecosystem & Geography

Associated Families

Sequences