Scaffold Ga0072682_111489

Overview

Basic Information

• Taxon OID: 3300005099
• Scaffold ID: Ga0072682_111489
• Source Dataset Name: Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5207
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Aigarchaeota archaeon JGI 0000106-J15 (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location

• Location Name: Guaymas Basin
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033662	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072682_1114893	F033662	N/A	VSGISKLVSTVIILAISITLAIAVSHLIMSFSKHYTRVEVIASSAHHGDPSIVLIVKNLGSEVISITDLCLNKIPISSLIGDSVISIHPDITSSPIQVKPGESLNITISLNPSRWGGGEIIEISIGTSSGNRYYAMVSLT*