Scaffold Ga0072682_110868

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0072682_110868

Scaffold Ga0072682_110868

Overview

Basic Information
Taxon OID	3300005099 Open in IMG/M
Scaffold ID	Ga0072682_110868 Open in IMG/M
Source Dataset Name	Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10095
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location Name	Guaymas Basin
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F098394	Metagenome	103	N
F104193	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0072682_11086813	F098394	N/A	MDVLLAALGSFAALASFTLSLTIWLWRLRRNEIAHLYRRMEQIEKRIENIEKDLTEVRERVARLEESVRKR*
Ga0072682_1108683	F104193	GAGG	MLEKLDRVLELLAERERTFDELKAETSLSDETLNLVIDFFVAHDFAERRNDHIRITDSGRKLLEL*

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