Scaffold Ga0072682

Basic Information
Taxon OID	3300005099 Open in IMG/M
Scaffold ID	Ga0072682_110853 Open in IMG/M
Source Dataset Name	Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005099 Open in IMG/M

Scaffold ID

Ga0072682_110853 Open in IMG/M

Source Dataset Name

Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 10, 8-11cmbsf

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8205
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (86.36%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8205

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (86.36%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location Name	Guaymas Basin
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Guaymas Basin

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023017	Metagenome	211	Y
F029954	Metagenome	186	N
F035145	Metagenome	172	Y
F049343	Metagenome	146	Y
F050065	Metagenome	145	Y
F066330	Metagenome	126	N
F091134	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072682_11085310	F049343	AGGAGG	MEWSRLRDKLRKGEWHIFSVVCLLAGVVAGREMTLLAKPEPILALIGIGVGVLAYLLLLLTATIIADIKERRKAPKTI*
Ga0072682_11085312	F035145	AGGAG	MLEKLSEFMRRDYNLKTIITEECCDLVRVEVICLTAKTSFPLLTLTYNKHTDNFILTVERKFITQHSTLKALIEALEKVREVIAKSA*
Ga0072682_11085313	F050065	GGA	MNMLKATASMEQIMLAIAYLKGLLRDAKRRGDKELVKYVGEIIGVYEARLQPQNNNN*
Ga0072682_11085316	F029954	AGG	MELRAKEYKFNDGERKVEYVIPPTNTPFFSVIFGKKGEVRMIAIHQRVLEHHEAVVLMSLLCGVIKNEERIW*
Ga0072682_11085321	F066330	N/A	MAEGKRRKGGREVVVSVALPIEEYLRLEEAVMRKHGRKRGVFGEFVREAIKKAVEEVLQAGGEE*
Ga0072682_1108534	F023017	GAGG	MRLKKERREEMKVKIIEFLKNADGHIASIPMLAKAIHASSPTAKSIVWELEVERKVSVVMLGGEYVVKLEELGEGV*
Ga0072682_1108536	F091134	N/A	LSCATAPSLLNFDFRRHSDIIALASSYTVLVAFASQLPSAHGRYYECLIPFLLIPTFDEFARTRAKTIALCVVAYLFFALPTLIHADLVNASLTLPITLSTAFTPLTVFAIAFALLYAYILTKSEKWRHGIALTLLAFVLLGSSATNLYNMHKISTQERECVVFNFLKQHSDEGVAFIADKEEWWANYCLCCFYAQVFLPSNFSSNTAKYLIVEKAGLDEGQKHIARLETGNDEVLVVEEVRKSEKTH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0072682_110853

Overview

Ecosystem & Geography

Associated Families

Sequences