Scaffold Ga0072683_119840

Overview

Basic Information

• Taxon OID: 3300005098
• Scaffold ID: Ga0072683_119840
• Source Dataset Name: Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 8, 4-6cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7982
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → unclassified Methanomicrobia → Methanomicrobia archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location

• Location Name: Guaymas Basin
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029623	Metagenome	187	Y
F035145	Metagenome	172	Y
F042112	Metagenome	158	N
F049343	Metagenome	146	Y
F050065	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072683_11984010	F029623	GAG	MNSYVRVRFERGNLIVEISKDAFKDAETKKEATKELQQIIKTYFGIRFFIRLSIVYAFTALFCAFVALTIILMM*
Ga0072683_11984012	F049343	AGGAGG	MEWSRLRDKLKRGEWYAFSAVCFLAGVVAGKGITTLGRAEPVLALTAVGAVLLAYWLALLTATIIAEIKEAPKTI*
Ga0072683_11984014	F035145	AGGAG	MLEASSEFTRRGYNLKTVITEECCDLMRVEVICFTAKTSFPLLTLTYNKLTDNFILTIERKFITQHSTLKALIEALRSVEEVVRNDERRTERGDM*
Ga0072683_11984015	F050065	GAG	VSDEVEKILLAIAYLEGLLRDAKRRGDEELVKYVGGIIRIYKERLQSQNSNN*
Ga0072683_1198403	F042112	GGA	MTFDEYSSAFPQFEEKYVSKLAYPHLLFIQIQKIMDSIDAGGDGMEELENLKALLKSSWRAEIDMKTEECRKKMEKEIKRIAKVKERVGITTYREMKRAAKVRYVREYVQHVIEKLDEVGLLLIEEQTVLRGGGLMP*