Scaffold Ga0072683

Basic Information
Taxon OID	3300005098 Open in IMG/M
Scaffold ID	Ga0072683_115554 Open in IMG/M
Source Dataset Name	Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 8, 4-6cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005098 Open in IMG/M

Scaffold ID

Ga0072683_115554 Open in IMG/M

Source Dataset Name

Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 8, 4-6cmbsf

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11736
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (92.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

11736

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (92.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location Name	Guaymas Basin
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Guaymas Basin

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023017	Metagenome	211	Y
F029623	Metagenome	187	Y
F029954	Metagenome	186	N
F035145	Metagenome	172	Y
F042112	Metagenome	158	N
F049343	Metagenome	146	Y
F050065	Metagenome	145	Y
F066330	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0072683_11555410	F035145	GGAG	MLEKLSEFMRRDYNLKTIITEECCDLVRVEVICLTAKTSFPPLSLTYNRHTDNFVLTIERKFITQHSTLKALIEALENVREVVKGNASF*
Ga0072683_11555412	F049343	AGGAGG	MEWSRLRDKLRKGEWHIFSVVCFLAGVVVGREITLLAKPEPILALIGIGIGVLAYFLLLLTATIIADIKERRKAPKTI*
Ga0072683_11555414	F029623	GAG	MNTYAKYVRARFERGNLIVEVSKDAFKDAETRKEATKELQQIIKTYFGIRFFIRLSIVYAFTALFCACVALIIVLLK*
Ga0072683_11555418	F023017	AGGGGG	VRLKKEKREEMKQKILEFLKNAEGHIASIPMLARAIHASSPTAKSIVFELEVERKVSVVMLGGQYMVKLEELGEGV*
Ga0072683_1155542	F066330	AGGAG	MAEEEKRKVVVSVALSVDEYLRLEEAVVRKHGRKWGVFSEFVREAIRRAVEGVLQQQK*
Ga0072683_11555422	F042112	GAGG	MSYDDFSPSFLQEEKYISKLAYPHLLFIQIQKIMDSIDAGGDGKEELESLKALLKPSWRVEIDVKTERCRREMEREINRIARVRERVGITTYREMKRAAIVRYVREYVQHVIEKLDEVGLLLIEERGVLRGGGVML*
Ga0072683_1155545	F029954	AGG	MELRTKEYKFNDGERKVEYVIPPTNTPFFSVIFGKKGEVRMIAIHQRVLEYHEAVVLMSLLCGVIKNEGDNGYRNGSSTLYH*
Ga0072683_1155549	F050065	AGGAGG	MLKATASMEQIMLTIVYLKGLLRDAKRRGDRELVKYVGEIIGVYEARLQPQNNNN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0072683_115554

Overview

Ecosystem & Geography

Associated Families

Sequences