Scaffold Ga0072683

Basic Information
Taxon OID	3300005098 Open in IMG/M
Scaffold ID	Ga0072683_104029 Open in IMG/M
Source Dataset Name	Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 8, 4-6cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005098 Open in IMG/M

Scaffold ID

Ga0072683_104029 Open in IMG/M

Source Dataset Name

Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 8, 4-6cmbsf

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13446
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (92.00%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

13446

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

23 (92.00%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location Name	Guaymas Basin
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Guaymas Basin

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F019588	Metagenome	228	N
F019935	Metagenome	226	Y
F040421	Metagenome	161	Y
F055335	Metagenome	138	N
F072934	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0072683_10402911	F014691	AGGAGG	MRKGIGFVSAILILMFVVVAVFTLSIAWSEIPVEPQANTSLANTSTIIPTLTSFLPYIALVVILAMAIGVFLSLVRVK*
Ga0072683_10402912	F040421	GAGG	MREESVRAITMLTLAFIIGFKSIILFLQHSFGFALTLFLLAWTCICFAFPDNLIGASIGQDLKLGEVIEKWVRRRELKRK*
Ga0072683_10402913	F019588	GGAGG	MGEEKRIEEEVKEVLERLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVRGMQKTIEVLDRKIGIPVKDLLK*
Ga0072683_10402919	F072934	GAGG	MAEMDIDKLLADEEIREKMNEWNREKAKRRLESMKNLSEPYRRYLEKIASGEWKVW*
Ga0072683_1040292	F015290	AGGAG	MLNNKGQAGEIAVFVILVFMVAFAYIFISPIVQNIKDVVPTIADATSWTNAQTQAMNWLFRAWYAYPFFAFIALLVWLIKRAIEKRSGEVV*
Ga0072683_10402921	F019935	AGG	MPKVKETANRTVVHVGDLWRRYHRASPKTKRRWKFRIKDVGRLKHSELILCKPPNGDWQTYAWSFSKGQVKKGKRKLLIYDAKAFEILQKLKENGDLRGWKLAFKG*
Ga0072683_1040293	F007460	AGGTGG	MDDEEGMGMGTAIFVVMLNIVFAIVFFFLVGSVMCGILPPLTNVVGIGETSPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEEW*
Ga0072683_1040296	F055335	AGGAGG	MRAYDILLFLVCLEATIGFISSLHVFPVDYVDASAVQTPADWNLQEVENQTATQSIFDKVMLATDMLFKALSMFLNMLVAIVAIYIPLTSVLGVPSEIALLLQGVVYVVYAWAIIQFLSGRSVKYME*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0072683_104029

Overview

Ecosystem & Geography

Associated Families

Sequences