Scaffold Ga0072683_101178

Overview

Basic Information

• Taxon OID: 3300005098
• Scaffold ID: Ga0072683_101178
• Source Dataset Name: Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 8, 4-6cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7912
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location

• Location Name: Guaymas Basin
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F028993	Metagenome	189	N
F091133	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072683_10117811	F009582	AGGAGG	MVARRGRREFIGGTGREVKEARVDVVLQRLEENIGSELKVYPSHVYRYGVNNIFQRTFAYLLGWQMSGEPIKLTATRTGLLKVAVSGGGFEEVDTLTGVATAEWSDVLEFAFVPFRIRFEAIDYPYCAMFSIDGVKWSDAVYVDGETPRDFDVNAKYIKVRRYGGTDAKYWVIAMR*
Ga0072683_10117812	F011723	GAGG	MVIYNKGLGRDNSTDEGKEIFSLTSKVEEKYKVRRIVITDVLTNPLIMEIWVERDRIGENIPLEVGSDFAPERVIDVDAEIPVGHTFSIKIKPQASGNQGSVRGWVEYEIVS*
Ga0072683_10117814	F028993	GAGG	VEMADIVEKAVKKRSERIAVSEAYYRDGVEHPTKDWLEEFKKAKDRRNAGLRRAMDEGLFEIGAERVGTDGWQRATLAKADRWLSGATSEEANEKYEEAMRDVAECIERARKAVEGMPTTTVEQRAEKSKRFQIEMAKCMEEKRKRR*
Ga0072683_1011788	F091133	GGAGG	MGIFDVWDTWADWLSDWWDAFMDKIDSVKAELWEWVDNIAKYWVARANEWFDILNHTWIEVTNLFDEAKRYAGSLFEDVKNYAVDLMEEAKSYADDIVTDAILKIDNWIATFGETVAELWDKLEPYVSAVITPLETAVDNIQNVKIPSLEDITNALKESVDNILNTDIPFLNQSISDLWNEASEIWNEIWNNIWISLNNAWTDINNLWNTISEIPADVWNAITAGWDGFTDFLFEQGQRFVEKLLDVEVGLDDVVEELKRKYGGGGA*