Scaffold Ga0072683

Basic Information
Taxon OID	3300005098 Open in IMG/M
Scaffold ID	Ga0072683_101130 Open in IMG/M
Source Dataset Name	Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 8, 4-6cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005098 Open in IMG/M

Scaffold ID

Ga0072683_101130 Open in IMG/M

Source Dataset Name

Hydrothermal sediment microbial communities from the Guaymas Basin, Gulf of California, Pacific Ocean - 8, 4-6cmbsf

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10638
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (100.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

10638

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (100.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Hydrothermal Sediment In Guaymas

Source Dataset Sampling Location
Location Name	Guaymas Basin
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Guaymas Basin

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F016098	Metagenome	249	Y
F016235	Metagenome	248	Y
F024940	Metagenome	203	Y
F028993	Metagenome	189	N
F040961	Metagenome	160	N
F067298	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072683_10113015	F067298	AGGAGG	MVVVIKEEDAGRIIRALGLKRRMRELEKQIADLQRRKAELQKEYEDLGVKIE*
Ga0072683_10113016	F009582	GGAGG	MRERGRRREFVGGTGRAVKEARVDVVLQRVEEEIGEEINAYPTKVRRYGVNNIFQRTFAYLLGWQSNGKPIKVGATAGGLLKVAISGAGFEQIDTLTGTAGVNWTDALEFAWTPNRIRFEALDYPYIAKFSTDGVTWSDEVYVDGDMPRDFDINARYVKVRRYGGTDASYFIIGMR*
Ga0072683_10113019	F028993	GGCGG	VEKAVKKRSERIAVSEAYYKEGVASPTKDWLEEFKKAKDRRNAGLRKAMEEGRFEQGAERVGTEGWQEATLAKADRWLTGATSDVAQRKYEERMRDVAECIERAKKAVEGMPTTTIEQRAEKSKRFQIEMSKCMEEKKRRR*
Ga0072683_1011303	F016235	AGGAGG	MDKNKISSSPPLFSHKRWSHRRGYQKCVKFIGIDKNDERFGRGFPLCAVIKFRIPVHRYTPRTQEIAKLLATLRILYGEEYMEELLALAEVEYLKMRREQKWHIHFGENSD*
Ga0072683_1011304	F040961	AGGAGG	MVNAVECRWSEEQAKGLLTFLIAEKKRHERDIHNIERSIQRIKREFGLTDADIAKCEELAWLYVEF*
Ga0072683_1011305	F024940	AGGAGG	MEREIIHKKIRSIKELREFITDYLIEHSEQRAKAMMTQNTFVIAYEQGFLDALKTIRDLLSKEGLLMYRYVFEEKKEREEDENRDTF*
Ga0072683_1011307	F016098	GGAGG	MSEERKYVYLRRTRSGNGVRMRDGEIVYIASIRSLEAFLHGDREFVAFMRFPYRQIAGENAERDMLYTFCDKCGAGRFFRKISEDKWRCETCGTERTTTELIEKMRSILESD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0072683_101130

Overview

Ecosystem & Geography

Associated Families

Sequences