NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072505_1496525

Scaffold Ga0072505_1496525


Overview

Basic Information
Taxon OID3300005097 Open in IMG/M
Scaffold IDGa0072505_1496525 Open in IMG/M
Source Dataset NameMiSeq S massa metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, San Diego
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)724
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Benthic Sponge Stylissa Massa Associated → Stylissa Massa Endosymbiont Microbial Communities From Guam

Source Dataset Sampling Location
Location NameGuam
CoordinatesLat. (o)13.4388546Long. (o)144.8224773Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034211Metagenome175N
F052942Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0072505_14965251F052942GGAGGMKVWVMQGSYEGELFSSVHFTQKGCALACIADVLEFLGVEDNETVLSVMNDVYSYTETDGEQTE
Ga0072505_14965252F034211AGGAGGMAYLKKDDLVIIPSAGGANIQARVVDMQFRRFRRSWKDKATGETKSRWKSVPYAVCECFLGAPIGTEFVIPGYKLKNETKDGEKLLVLRDQSAAEFGGPWIEKMIEDSRAKREVAQ*

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