Scaffold Ga0072505_1496525

Overview

Basic Information

• Taxon OID: 3300005097
• Scaffold ID: Ga0072505_1496525
• Source Dataset Name: MiSeq S massa metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, San Diego
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 724
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Benthic Sponge Stylissa Massa Associated → Stylissa Massa Endosymbiont Microbial Communities From Guam

Source Dataset Sampling Location

• Location Name: Guam
• Coordinates
  • Lat. (^o): 13.4388546
  • Long. (^o): 144.8224773

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034211	Metagenome	175	N
F052942	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072505_14965251	F052942	GGAGG	MKVWVMQGSYEGELFSSVHFTQKGCALACIADVLEFLGVEDNETVLSVMNDVYSYTETDGEQTE
Ga0072505_14965252	F034211	AGGAGG	MAYLKKDDLVIIPSAGGANIQARVVDMQFRRFRRSWKDKATGETKSRWKSVPYAVCECFLGAPIGTEFVIPGYKLKNETKDGEKLLVLRDQSAAEFGGPWIEKMIEDSRAKREVAQ*