NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072505_1103906

Scaffold Ga0072505_1103906


Overview

Basic Information
Taxon OID3300005097 Open in IMG/M
Scaffold IDGa0072505_1103906 Open in IMG/M
Source Dataset NameMiSeq S massa metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of California, San Diego
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2071
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Benthic Sponge Stylissa Massa Associated → Stylissa Massa Endosymbiont Microbial Communities From Guam

Source Dataset Sampling Location
Location NameGuam
CoordinatesLat. (o)13.4388546Long. (o)144.8224773Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020857Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0072505_11039065F020857AGGAMKMNFTLAVAPPFMYPMTSLLAMPTHSVWKYGLFSEPARQRQVAKYGNLKCYESLSFSGDIESLEPSKL*
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