Scaffold Ga0072505_1018149

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0072505_1018149

Scaffold Ga0072505_1018149

Overview

Basic Information
Taxon OID	3300005097 Open in IMG/M
Scaffold ID	Ga0072505_1018149 Open in IMG/M
Source Dataset Name	MiSeq S massa metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of California, San Diego
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6898
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Benthic Sponge Stylissa Massa Associated → Stylissa Massa Endosymbiont Microbial Communities From Guam

Source Dataset Sampling Location
Location Name	Guam
Coordinates	Lat. (^o)	13.4388546	Long. (^o)	144.8224773	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083784	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072505_10181491	F083784	N/A	MDFNGTPFEVTMAAGTTVVTADIPIVDDEINEAEEEFVVLLEVVSVTTNPVEFTTSTTVCRIPPSDRKCSTECLHGLN*

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