NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0072501_1009383

Scaffold Ga0072501_1009383


Overview

Basic Information
Taxon OID3300005094 Open in IMG/M
Scaffold IDGa0072501_1009383 Open in IMG/M
Source Dataset NameIon Torrent S massa
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSalk Institute
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2260
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Benthic Sponge Stylissa Massa Associated → Stylissa Massa Endosymbiont Microbial Communities From Guam

Source Dataset Sampling Location
Location NameGuam
CoordinatesLat. (o)13.4388546Long. (o)144.8224773Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007683Metagenome / Metatranscriptome346Y

Sequences

Protein IDFamilyRBSSequence
Ga0072501_10093831F007683GAGMMSLLAMSLGLRFCVSRKGGTGGGGWVHPKGANSMAASGLVFRSDLVGTGRAISILFGINGVRNK*
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