Scaffold Ga0072334_10458320

Overview

Basic Information

• Taxon OID: 3300005086
• Scaffold ID: Ga0072334_10458320
• Source Dataset Name: Microbial Community from Halfdan Field MHDA3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2375
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: North Sea, Denmark
• Coordinates
  • Lat. (^o): 55.49
  • Long. (^o): 7.42

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002151	Metagenome / Metatranscriptome	589	Y
F008886	Metagenome / Metatranscriptome	326	Y
F030418	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072334_104583201	F008886	N/A	GASENSSYTMNNMITTGAIRNRPIITFTNTTAATRTVDVAVFIGN*
Ga0072334_104583203	F002151	N/A	MEFAIYIAIGCSIAAFMLSLIACARVGKFVRATADTDWETLANLTGDIAALKRTSQTLNNRLNGMNKAVVPQDQIIQQMLEHQNVEQIRRGG*
Ga0072334_104583204	F030418	AGG	MNIGSIFDRVVPAVIGGLTGGPMGAVTAIVGTEQAKKAQKLEGARQVMYTQDPGLSQGFYGNQPIQASTGSSSFFGNLGQTIGGFGSDVQNFFKDIRPALNLFGVGGNMPRTNAGAATTIINQRPDETAMSGELLGANLGMGSLLLQQGRRLLTSPGGQAALGFGAGAVGAALGGDGSSAPRITRKMKSDVRRIYMMAGMDPNITAQILNNMGTYPRINFDASIVFFILTKRFRNDGPVVTKAAVRKTKTTLRRMKGVVDMYNNVCKPTTRRAPARRAAPKAVQLIKN*