Scaffold Ga0072334_10405617

Overview

Basic Information

• Taxon OID: 3300005086
• Scaffold ID: Ga0072334_10405617
• Source Dataset Name: Microbial Community from Halfdan Field MHDA3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1866
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: North Sea, Denmark
• Coordinates
  • Lat. (^o): 55.49
  • Long. (^o): 7.42

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008731	Metagenome / Metatranscriptome	329	Y
F067210	Metagenome	126	N
F079326	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0072334_104056171	F008731	AGGAG	MFVIFATKPLNDGTKGFRFNFLGYKGLTRKRKHTSRGYKINVGGCMKAIHLGKRTVYLENSSTPNKLRHFAG*
Ga0072334_104056172	F079326	AGGA	MTRYYIATVSSDGRHANQRWLTNVDDLTDVMVQYVNEGYRVTIEEEIHQ*
Ga0072334_104056173	F067210	AGGAG	MITKDAIQAYNANYSGLRGAKILEFYMEQCDFDPEQYWPTFRMQKGKEVFKFILSQDPEGNGGGFAFIEDV*