Scaffold Ga0072334_10311537

Overview

Basic Information

• Taxon OID: 3300005086
• Scaffold ID: Ga0072334_10311537
• Source Dataset Name: Microbial Community from Halfdan Field MHDA3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1698
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: North Sea, Denmark
• Coordinates
  • Lat. (^o): 55.49
  • Long. (^o): 7.42

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022202	Metagenome / Metatranscriptome	215	N
F024324	Metagenome / Metatranscriptome	206	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0072334_103115371	F022202	GAG	MKNKDQKILQNWIDTLQGISVRGMDSKSRLEARLLKKAWLEESKKIENKIPDHDPVFYQNIKEALKKKKDKTASKNLWTSFFENKFKAFLVVILGTGVVYASKKTYDGLVSVAEELNHVVLAKDTTKTKAENEIEENGFWDEHFDKHGGFTGF*
Ga0072334_103115373	F024324	N/A	STQKNNKDRLNDFKGKNINLRINFPQADGEDPVIINTDLISIFGFANLKIAFLGNFIQGKVFDSLMAYFNTIRVEVTNPHKIYFDIPSDEYSLNGYVAAKLKAKELCENIVKTTSL*