Scaffold Ga0072334_10294476

Overview

Basic Information

• Taxon OID: 3300005086
• Scaffold ID: Ga0072334_10294476
• Source Dataset Name: Microbial Community from Halfdan Field MHDA3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1919
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: North Sea, Denmark
• Coordinates
  • Lat. (^o): 55.49
  • Long. (^o): 7.42

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002430	Metagenome / Metatranscriptome	560	Y
F049286	Metagenome / Metatranscriptome	147	Y
F060432	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072334_102944763	F002430	AGGAG	MMTLNLPPKQVNAMLVAMDTEIDYLFETGGKPDWETFPELAAMLMAYYTTRCKFEEIYDD
Ga0072334_102944765	F060432	AGGAG	MTYEITHDQRLALLEAHNNLRTALQTVAECQDLWLSDIRNLEKLECDLHSIFKFVPEQDEQGRRMYYGDWILDEEDGDDE*
Ga0072334_102944768	F049286	GGAG	MPKYEVTRSYTVVCVATVEADTHDHAEEIACISGDIHWKEYDGDYDTEVYVEKIDT*