Scaffold Ga0072334_10284209

Overview

Basic Information

• Taxon OID: 3300005086
• Scaffold ID: Ga0072334_10284209
• Source Dataset Name: Microbial Community from Halfdan Field MHDA3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1480
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: North Sea, Denmark
• Coordinates
  • Lat. (^o): 55.49
  • Long. (^o): 7.42

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001689	Metagenome / Metatranscriptome	651	Y
F004549	Metagenome / Metatranscriptome	433	Y
F007093	Metagenome	358	Y
F067200	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0072334_102842092	F007093	N/A	MQVIKIWLLISMVSMPGMPSVKHTAELWFDEPKCEARRIDIENVLYNTAAEQGINPVYIETWCLESNMFVINNS*
Ga0072334_102842094	F001689	AGGAG	MKLKRDYEMTFKEGLRLGLRLTRAKAYIENARDAKRMGDDEMAELYMGFAKDWNDLARNAGRKFCPTSAHEPDQPAFDFGDVEMQEHLSKLPHQLKETG*
Ga0072334_102842095	F004549	AGGAG	MNIKKFKSVAVAIETYKLLKKIAAADDRSAGMQITYLVKQEAKKRKLAA*
Ga0072334_102842096	F067200	N/A	MKTETVMPRFKSYRKFKPEWKYEKKCCKECDKEYLTDNMMGAKKGSYNFFWYCIRCYNSLQKS*