NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068304_1170117

Scaffold Ga0068304_1170117


Overview

Basic Information
Taxon OID3300005079 Open in IMG/M
Scaffold IDGa0068304_1170117 Open in IMG/M
Source Dataset NameMastotermes darwiniensis gut microbial communities from Townsville, Australia - TV02
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Queensland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1052
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Insecta → Digestive System → Unclassified → Unclassified → Mastotermes Gut → Termite Gut Microbial Communities From Australia

Source Dataset Sampling Location
Location NameTownsville, Australia
CoordinatesLat. (o)-19.280075Long. (o)146.824457Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004326Metagenome443Y

Sequences

Protein IDFamilyRBSSequence
Ga0068304_11701171F004326GGAMPKQFPHSLDEKLVDKEQFYQWLKFGDIKGETESTMVAQDQALSTKCIKKKF*

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