Scaffold Ga0070770_10242424

Overview

Basic Information

• Taxon OID: 3300005078
• Scaffold ID: Ga0070770_10242424
• Source Dataset Name: Microbial Community from Halfdan Field MHBA5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 792
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: North Sea, Denmark
• Coordinates
  • Lat. (^o): 55.49
  • Long. (^o): 7.42

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004971	Metagenome	416	Y
F076711	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070770_102424241	F076711	AGGAGG	VGIGWAHCPICGRRFEGSYFPDTNVNTAVYAVERHTILRHHKKITPGGVADAKVPDDFIRASEMKTWFAGGTGNIHLKGNACISCVCGRFFVVDFEEFYYNGKNIKVIVREFDDIGRYKKITEKKEVIYVGYVDVTKFEKIWKQTWEQTRERIIREHLEEHGIHL*
Ga0070770_102424242	F004971	N/A	YEDGWFEALKALAVRKISEATGEPCEVAMGFCNADEALHVVTASGRVFCVCYADVLDVSAVEEVQCPRCGCHIPVDMLEEHEELCSE*