Scaffold Ga0070770_10173032

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0070770_10173032

Scaffold Ga0070770_10173032

Overview

Basic Information
Taxon OID	3300005078 Open in IMG/M
Scaffold ID	Ga0070770_10173032 Open in IMG/M
Source Dataset Name	Microbial Community from Halfdan Field MHBA5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Shell Corporation
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	743
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location Name	North Sea, Denmark
Coordinates	Lat. (^o)	55.49	Long. (^o)	7.42	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005105	Metagenome / Metatranscriptome	412	Y
F015027	Metagenome / Metatranscriptome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070770_101730322	F015027	AGGAGG	VTDELYEATKKEVMSEHEEYVNADVPIEIWIERNKYLHQHIDMLTEELIKVRLDNKKLSKQIEDQIKQFRNTGGL*
Ga0070770_101730324	F005105	N/A	ICDRCMGNGYRRIWKDQTESEKITIQCMKCESAGEIDEEPSYDYSGVDINKLQ*

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