Scaffold Ga0071116_1080611

Overview

Basic Information

• Taxon OID: 3300005077
• Scaffold ID: Ga0071116_1080611
• Source Dataset Name: Water filled karst sinkhole microbial communities from Little Salt Spring, North Port, Florida - Phototrophic mat 2014
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Pennsylvania State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1799
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Sinkhole → Water Filled Karst Sinkhole Microbial Communities From Little Salt Spring, North Port, Florida

Source Dataset Sampling Location

• Location Name: North Port, Florida
• Coordinates
  • Lat. (^o): 27.074722
  • Long. (^o): -82.233333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016800	Metagenome / Metatranscriptome	244	Y
F048261	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071116_10806112	F016800	AGGA	MLDAFTDYPIPSYGDIEGEKAPIRRAKILTYDRNKYCDVLVYQVDEDGDLRGTVVNFKCFYLYKNEARLDDGNPFTYEELETLPWTKVSSPHSI*
Ga0071116_10806114	F048261	GGTGG	VFESNQGDATMTKPLNCKLDVSKIQTLEDVRNVFECMCLSSNASEEHEQYELLKEYFTIPYETPEIKLVLPRKSLEEISQEFDEKIDKQVEDVKYKFEQLKYRQEYQFSKKITQIIEDFEYAKKTGAFPLKLTLGLDYSKLTATGSNITSNFVIKEGGKEVGYYTFGNGYLKYYMNKKPNFVVRFCMDKLLNFRWIDVK*