Basic Information | |
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Taxon OID | 3300005077 Open in IMG/M |
Scaffold ID | Ga0071116_1035699 Open in IMG/M |
Source Dataset Name | Water filled karst sinkhole microbial communities from Little Salt Spring, North Port, Florida - Phototrophic mat 2014 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Pennsylvania State University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3376 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Sinkhole → Water Filled Karst Sinkhole Microbial Communities From Little Salt Spring, North Port, Florida |
Source Dataset Sampling Location | ||||||||
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Location Name | North Port, Florida | |||||||
Coordinates | Lat. (o) | 27.074722 | Long. (o) | -82.233333 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000710 | Metagenome / Metatranscriptome | 925 | Y |
F002287 | Metagenome / Metatranscriptome | 574 | Y |
F004838 | Metagenome / Metatranscriptome | 421 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0071116_10356991 | F000710 | N/A | MAMNMITYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIRLSSTTSAAPGTAVDAMQLRVTLTINNDVVIDDVCAFDLGANAGAGGVTTGFPAFIPFPRALTGQDTILLRVTNSSGASQILNTVVYYKNEI* |
Ga0071116_10356992 | F002287 | N/A | MSQIGKLGYVDAKLGAPTGGQQTTRVLFNTIEGPGTTSTLSFFKNFNGLTNGQTNLSQNKLDSMESMVIKTVWLAQIESTGEVGVFGQQVQQTLNIIVGNQTVVKNLPIQFNQGINGQAFDRLHENAGAASDLTAGGTNLLQTIQPVEIRLLTDIVIPPQVSFEVRIDSNFGVYGTGAVVCALAGYGKIFSAGSSF* |
Ga0071116_10356993 | F004838 | N/A | MTAQDKILHVANKLGLTSLKDMQASTGAVYDVDTELAGTIFNQASRHANPGVANINENQFEVNEALLVETISFYVTTEFGQVRNFQSVYGSNAVIVFDLVIGNKRVMKDTPIFAAGSPFTFANVANTPTTSGETTLQVLLPRHQVFMEGAGILIPPQVQWYVNYTIYNVITGAIIAPTASTNIGCYLYGTKVLLNFNTSI* |
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