Scaffold Ga0071116_1008894

Overview

Basic Information

• Taxon OID: 3300005077
• Scaffold ID: Ga0071116_1008894
• Source Dataset Name: Water filled karst sinkhole microbial communities from Little Salt Spring, North Port, Florida - Phototrophic mat 2014
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Pennsylvania State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9006
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.56%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Sinkhole → Water Filled Karst Sinkhole Microbial Communities From Little Salt Spring, North Port, Florida

Source Dataset Sampling Location

• Location Name: North Port, Florida
• Coordinates
  • Lat. (^o): 27.074722
  • Long. (^o): -82.233333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F003659	Metagenome / Metatranscriptome	474	Y
F006697	Metagenome / Metatranscriptome	366	Y
F010159	Metagenome / Metatranscriptome	307	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071116_100889410	F003659	N/A	MPTYSANDVLGRYLIAREDVPVYDLPNGTRIGEIKKGNSTAEVYSYVVRNGQVWWLFDYTIPGQTPGAYYVMQKDGRFSLSTTPGNVNVAPNILPSVDVMPDMQKYLIWGGLGLLALLVLKK*
Ga0071116_100889415	F010159	N/A	MSWQIPTLIEQDIVSGKAQYRTFQTGNGGQSILPVPPNSYVVIFGYDFSPAGGGFTLNEDQSGDSVQQLNDSIIRYFETQQISFYTGTDFYPFIHHVDIRTTLAPRRIDASAPDANLVNLYRRTQEVNNTPIARQVYITSTNDVTITHGLILKSVRASTNPIPVTNRTPLGLTYGGSGQNISTQTNYGPGATPLQFMQPSPKDYQDFAFGLLPANADGQAFATPDTGNGLIDSLVWVNAVLGAAFESEAAISYYLNLHYALYTETVPESRG*
Ga0071116_100889416	F000710	N/A	MASNINISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKSFEGIKFSAAASGAPQTPINATQLRVTLTINNDVVIDDVVAYDLGAASAAGITSGFPHYIPFPRALTGQDTILLRVTNSSGGSQILNAVVFYKNEI*
Ga0071116_100889417	F006697	N/A	MANQVQKLSYVDAKLGVGLPGQQTTRVIYDSVNAVAGQGFYEFFTNFAGKTEFQTNLTTNKLDSAESMVIKSIQLIGNFAGSPTPASLANHLNLNITVGNQVVVKDFDPSFNASNRGLAFDRLHSGFNSANNLELRLLTDIVIPPQVNFKATLQLSDAANVALNDDITIVLKGYGRIFSAGNSF*
Ga0071116_100889418	F002259	N/A	GMSAQQKMLHVADRLGLTTLKDMQGTTRMVYDSNTTASTNFTFFKGASQRTFPLTNIGANGNQFQVDEALLVEKIGFFVPTDAAGFGYSGLLSPGIGDFSVKFDLVIGNKTVIKDATVELGGEQAFYNDGAQASSVMDLEGVGILIPPQVEYYVVAKVFGVYTRASTSQRLGCYLFGTGALLNFNTTI*