| Basic Information | |
|---|---|
| Taxon OID | 3300005077 Open in IMG/M |
| Scaffold ID | Ga0071116_1008819 Open in IMG/M |
| Source Dataset Name | Water filled karst sinkhole microbial communities from Little Salt Spring, North Port, Florida - Phototrophic mat 2014 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Pennsylvania State University |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9051 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (71.43%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Sinkhole → Water Filled Karst Sinkhole Microbial Communities From Little Salt Spring, North Port, Florida |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | North Port, Florida | |||||||
| Coordinates | Lat. (o) | 27.074722 | Long. (o) | -82.233333 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008501 | Metagenome | 332 | Y |
| F042291 | Metagenome | 158 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0071116_10088194 | F042291 | AGAAGG | MPLYQSFNSRTGAWVKYHFTKDGFEVVDVKQREPRVPFKKTPIKGKRRI* |
| Ga0071116_10088198 | F008501 | AGG | MKLQKSAVDLTDLAIGIVVLGIVVSIGTTVLVNVADTNYELSATCNTTSGVYTGCPDYELATEAATGLAEYGNWFNIIVIVGVAAVVLSLIFMAFGGRNGGMSY* |
| Ga0071116_10088199 | F008501 | GAG | MKLQKSAVDLTDLAIGIVVLGIVVSVGATILVNVRDTNDTNGIAYNLADDAATGLAEYGNWFNIIVIVGVAAVVLSLIFLAFGGRTGGMSY* |
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