Scaffold Ga0070431_1187803

Overview

Basic Information

• Taxon OID: 3300005074
• Scaffold ID: Ga0070431_1187803
• Source Dataset Name: Marine benthic sponge Stylissa massa associated microbial communities from Guam, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Utah
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 725
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Benthic Sponge Stylissa Massa Associated → Stylissa Massa Endosymbiont Microbial Communities From Guam

Source Dataset Sampling Location

• Location Name: Guam
• Coordinates
  • Lat. (^o): 13.4388546
  • Long. (^o): 144.8224773

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034211	Metagenome	175	N
F052942	Metagenome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070431_11878031	F034211	AGGAGG	MAYLKKDDLVIIPSAGGANIQARVVDMQFRRFRRSWKDKATGETKSRWKSVPYAVCECFLGAPIGTEFIIPGYKLKNETKDGEKLLVLRDQYAAEFGGPWIEKMIEDSRAKREVAQ*
Ga0070431_11878032	F052942	GGAGG	MKVWVMQGSYEGELFSSVHFTQKGCALACIADVLEFLGVEDNETALSVMNDVYSYTETDGEQTEAFEWDQEKMKNMSSEELWKIFSDW