Scaffold Ga0070431_1036304

Overview

Basic Information

• Taxon OID: 3300005074
• Scaffold ID: Ga0070431_1036304
• Source Dataset Name: Marine benthic sponge Stylissa massa associated microbial communities from Guam, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Utah
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2653
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Benthic Sponge Stylissa Massa Associated → Stylissa Massa Endosymbiont Microbial Communities From Guam

Source Dataset Sampling Location

• Location Name: Guam
• Coordinates
  • Lat. (^o): 13.4388546
  • Long. (^o): 144.8224773

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014803	Metagenome	260	Y
F044431	Metagenome / Metatranscriptome	154	N
F089158	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070431_10363043	F044431	N/A	MVKIITNQSGAKGFVCQGQFITDPYSTECMRGVVDPKQYYGLTDDELIHFKHLKPLEEKPQPSYEELVKNLKGMKFFIVRWCGDADSPSSHKVDDPIKFFDEYHYGDDVVKDLKEMAVGEKYNVDEMMQDIEILRYE*
Ga0070431_10363044	F089158	AGGAG	MKNSVVTWHGYDNYNMNCNIEDLKKRGFECSSYNNDLAPSYTNKKGNVQVFFIDLNSDEMKAESMTYKFSVMKLDEHGEYSETIGTTNSFEEMLKMVKKGEK*
Ga0070431_10363047	F014803	N/A	MNKEQREINKRVNRAFCKLHILSNITWTPYRDELFNMNRKDEKQHRFGDWAEHHKGSASINDCAKLFTVKHIAESLLNPNKWDVKDLLTIKKSCIYSQSLVNNYGDRIKKAWIDEDIKYLADLDYIALVNWDLYQKDKKEVA*