Scaffold Ga0070431_1029764

Overview

Basic Information

• Taxon OID: 3300005074
• Scaffold ID: Ga0070431_1029764
• Source Dataset Name: Marine benthic sponge Stylissa massa associated microbial communities from Guam, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Utah
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3013
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Benthic Sponge Stylissa Massa Associated → Stylissa Massa Endosymbiont Microbial Communities From Guam

Source Dataset Sampling Location

• Location Name: Guam
• Coordinates
  • Lat. (^o): 13.4388546
  • Long. (^o): 144.8224773

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006793	Metagenome	364	Y
F012584	Metagenome	279	Y
F016820	Metagenome	244	Y
F037769	Metagenome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070431_10297644	F037769	GAGG	MSYKQTESDKSDEKLLRRLLTEEMPLQDATDIITHVFSNLIRWTYDDAVIHLTQVFNFTDEEADQLLSKHNIVCNSAPDLIMNPPPNFNATAPNDVKDFATNLWHARKHLLDAKKLISATALTPSDYDHQDDFQDALVQRMHLAEKFMEINKYIDEHLDFAKHYTPPQSS*
Ga0070431_10297645	F012584	N/A	MKLRPKTECFRPKMPENTFILNEDSLPTLGDSDPWGKIMVWRKDVGWSVIPLHDVVQFITMKHTHWTYTPYFPYNKSVTEQ*
Ga0070431_10297647	F016820	N/A	MTKKEFSYIVISSSGDKVEEIHGVYKDVEGACYGARSALFTLFPKHGDEAKIIRCEIISTEEAKKQHEDAKPKDLFEKCEDDYCPLPTQQVS*
Ga0070431_10297648	F006793	N/A	MTNHRSTNEEKEQRINEAADELAKGKRAMDVSKKLAKKYSVSIQQAREYVRLAKPVLTESISPNDRAYIFSKVMSCLEQDRLDARKDENLKDQTKSTAGMVKMVSLLTSIDQVGSWDSAYDQHLFKNFSEVKKKIKHNDLDSLDDDLPEGEIPF*