Scaffold Ga0070431_1023924

Overview

Basic Information

• Taxon OID: 3300005074
• Scaffold ID: Ga0070431_1023924
• Source Dataset Name: Marine benthic sponge Stylissa massa associated microbial communities from Guam, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Utah
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3436
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Benthic Sponge Stylissa Massa Associated → Stylissa Massa Endosymbiont Microbial Communities From Guam

Source Dataset Sampling Location

• Location Name: Guam
• Coordinates
  • Lat. (^o): 13.4388546
  • Long. (^o): 144.8224773

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002215	Metagenome / Metatranscriptome	582	Y
F007475	Metagenome	350	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070431_10239241	F007475	N/A	KIQLNFTSGNAISGEYTITDVPNPNSFTVVYPFTQTTGGYVTVENLKKHEYVGAWLLEPSDKPIGKGLESWEKRWAKEKRKMQEAVEVFALYNRSTKWEGNKNIIGDFNLPQDVANFDPSVIAMTLTDSLKRDETGGLNRSGKPFNTTNRMIAMVNKLFNKAPTVLDDIKFGIVNKPLSEFTNVFEAGLLKAGDYINGELLDAAANTSNMDAGTYNPETAQDTVVDAGLYINV*
Ga0070431_10239243	F002215	N/A	MEPQVIAAIISGSIGAFAGISRALGNFNKKLDRRFENVERKVEKLKNEVLHDYVLKEDFLREMQAVHSKLDRILDHLLNK*