Scaffold Ga0070431_1005851

Overview

Basic Information

• Taxon OID: 3300005074
• Scaffold ID: Ga0070431_1005851
• Source Dataset Name: Marine benthic sponge Stylissa massa associated microbial communities from Guam, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Utah
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7075
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Benthic Sponge Stylissa Massa Associated → Stylissa Massa Endosymbiont Microbial Communities From Guam

Source Dataset Sampling Location

• Location Name: Guam
• Coordinates
  • Lat. (^o): 13.4388546
  • Long. (^o): 144.8224773

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000999	Metagenome	809	Y
F001660	Metagenome / Metatranscriptome	655	Y
F063764	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070431_10058511	F000999	AGGA	MDIEKIIKEVKQIEEQSEFIVSWFAKKYQKTIRRVGHLNKDGCRTWEDYKGNKLMCFWDPVINRYTTCINPVITYKNKRN*
Ga0070431_100585118	F001660	N/A	YEGEIMADPAKFKSLSVPREDWEQLGVLANKTNRTRSKMIGRLIRFFMDNKGVRSNGKSNKNS*
Ga0070431_10058512	F063764	GAGG	MAESTKFFRQKKGQWVWIFDLKTNRKKKVELQLLLDKINNNILDRKYFALKEERDEFAKDCRS*