Scaffold Ga0070431_1000032

Overview

Basic Information

• Taxon OID: 3300005074
• Scaffold ID: Ga0070431_1000032
• Source Dataset Name: Marine benthic sponge Stylissa massa associated microbial communities from Guam, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Utah
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40008
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (46.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Marine Benthic Sponge Stylissa Massa Associated → Stylissa Massa Endosymbiont Microbial Communities From Guam

Source Dataset Sampling Location

• Location Name: Guam
• Coordinates
  • Lat. (^o): 13.4388546
  • Long. (^o): 144.8224773

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008401	Metagenome	334	Y
F025263	Metagenome / Metatranscriptome	202	Y
F060451	Metagenome	133	Y
F097164	Metagenome	104	Y
F098268	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070431_100003211	F097164	N/A	VLASFDFISPPELIAVTTAFLGGEIFLDPASSDRANTVVQASRFFTWENNGLNQTWRGKNVYLYPPRDIALKSEQTKSTKLFEKTNYFKKSNQRVWLEQAHRKWLKREFDEGIVFITSTEVALLATQKSGIDLPICILKEHPQLTRDDEEMKKTKNSKVFGFVFYLPSIKNYEDRIHDFHQLYSDLGRVYL*
Ga0070431_100003216	F060451	AGCAG	MNGSEHVSVSLTLEDEFVLTRIKNAAHELKGKERDQYLWNRIVRLVCRERAFKYVVDELGVCVDPNIGVFDDLEDEQD*
Ga0070431_100003218	F008401	N/A	MESQKLLTIAQTAELLNCSAGFVRKRISLTESRQPGGWPKSTYVNLQPNGAKSLFRINKEALQDFLKTQDEQKEVSVEAKVEEETPCSTGQCPV*
Ga0070431_100003222	F098268	AGG	MPWHEKFRPDVNLKDFSVLYDYNYSSMWTRWRRGYELYMYTNQALVGLNYTFRYAMNGQAGSGGTEIPGLMYMYPSTEQDMGMRMVVIRPRDSINLLDLGLSVKSVFNYDIINKVIGVELSSNFGPPVSDMTGELVSDRFEADGTPKTTYNNYTVVAVGTKAGGPQVPTGASDLDTLFLSVAPDKSFTTIQDKSFSSPAFGNPTVGEFLSTAMRFGCNCPDYLAREDFNLYKYAQKKTYPYTGVQDLKPGTYDAGTNTFDGERPVDTRDFPGFTRDFGFIYTKNLFLGPVDGTDTKASSYSDPNLLFFQPKFCKHIYASWWDMQNRFPNYKYLGAFLQQPTDEPMDGRYREYFDINLDKQTKKLQTARSLNWWEAYSPSRESVPDHVLYSDMNPTMVKVLNFDTLASGVSVPLVPSGFIMFDIDEFNPLQPVPPENRPIIDGGQYVDGVISGASGTIIYDGGLYANGAPVPPLFSPIINGGTY*
Ga0070431_100003229	F025263	AGGAGG	MAINANQLHVAKIYPGNYTNVLRYWHEEKSVAFQNANGVDSTFTNQPVGGPVGVVFQPGWIAQQAVGYVDLSYQALGTNNQLSYYTKPYGSGQNSAEQPFLNGDVIVPSPDFHKDVRADITDGIKVPATAYVYRASLRLSGGDIVSSGVAGADSTPELTLVPAVGVGLKDDGTVVSGQFGASITGANSAIANGSTGSTNIFDSSSWAALGSETQWKLFTTTDLGGAAGSGLAQGSGVYDPRAAANKLSGDDKALAICEVCWIIPDEPPERADLALQPDGIVESSTYTSTSPA*