NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068302_10046262

Scaffold Ga0068302_10046262


Overview

Basic Information
Taxon OID3300005071 Open in IMG/M
Scaffold IDGa0068302_10046262 Open in IMG/M
Source Dataset NamePorotermes gut microbial communities from Mount Glorious, Queensland, Australia - TN01
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Queensland
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1465
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Dictyoptera → Blattodea → Blaberoidea → Ectobiidae → Blattellinae → Blattella → Blattella germanica(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Insecta → Digestive System → Unclassified → Unclassified → Porotermes Gut → Termite Gut Microbial Communities From Australia

Source Dataset Sampling Location
Location NameMount Glorious, Queensland, Australia
CoordinatesLat. (o)-27.330504Long. (o)152.763993Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004009Metagenome457Y

Sequences

Protein IDFamilyRBSSequence
Ga0068302_100462621F004009GGAMNETRTVKKIFEEKLGGRRGRGRPRLRWIDDVEDDLRNIGIKRWRIKALDRVEWASIIKEAKAKLKGP*

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