Scaffold Ga0071350_1099060

Overview

Basic Information

• Taxon OID: 3300005069
• Scaffold ID: Ga0071350_1099060
• Source Dataset Name: Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1563
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.611214
  • Long. (^o): 163.119356

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016243	Metagenome / Metatranscriptome	248	N
F037570	Metagenome / Metatranscriptome	167	N
F039941	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071350_10990602	F016243	N/A	MNEAQITKIVMRLATRSKWSIEVRRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKTYQEVDDVCEHLLKHYLKSEYIQIHRPSFSNTTTMKDSKAEFIQKLLEISERRKSLKAQDSEITTHSIYYRIDPGLRIALNNNIVTLLTIDNELIDLKVMYEFLIENCKND*
Ga0071350_10990604	F037570	AGTAG	MNIKKLDLLKIRNLKFRASQRQAIIDRLLRKRDLEKDLWKVSVKTLIILAKIKFRCEELERISENLQQTVINGY*
Ga0071350_10990605	F039941	N/A	MDIETLALRLEEVRLSRLEVLEEKKVLAGKLLAGNLRIELKRSIMENMSLLIQLDLTLNEAEILYESLIECRLLHAR