Scaffold Ga0071350_1083305

Overview

Basic Information

• Taxon OID: 3300005069
• Scaffold ID: Ga0071350_1083305
• Source Dataset Name: Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 966
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.611214
  • Long. (^o): 163.119356

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000865	Metagenome / Metatranscriptome	855	Y
F006134	Metagenome / Metatranscriptome	380	N
F098642	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071350_10833051	F000865	N/A	VKSKENLETMIKIDEAKIIARNDEVKAIEKTVEEFRARKEKQIDKRIETKASMTLPHPFATISHISILTFTSFICTFNIFISIFSSLVADLLDHHFQTFIIGNLSDCKLQQLSRQTASIQADTVVKTLANADSIRTFKIPGNWPEVYYKNRSQNPLVPSHLLSGRVRKSETKFHPNSFIFNYLDSSR*
Ga0071350_10833052	F098642	AGGA	MGGAIFQKEGVKVPVTNNKVKITISAKKVMQKMTLKVKPMTSK*
Ga0071350_10833053	F006134	N/A	KKHSQNKILGEKIAKILHQNTDFSDEIAANSQTPSEKLKKDPIMALVTKTISTYMLVKHSKNAKELSRKENLSPWGEPFFKKKE*