Basic Information | |
---|---|
Taxon OID | 3300005069 Open in IMG/M |
Scaffold ID | Ga0071350_1037195 Open in IMG/M |
Source Dataset Name | Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1322 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Fryxell, Antarctica | |||||||
Coordinates | Lat. (o) | -77.611214 | Long. (o) | 163.119356 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004974 | Metagenome | 416 | Y |
F015060 | Metagenome | 257 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0071350_10371951 | F015060 | AGG | MMVELRSGTNTGGQEPRTAEGRDPNIPEDIEVIDQGDQMANQGAQMMDPANQQGQPAEGAAQGVYVGGTYPATLARAAQGTPSYRPPQFAFTTPTARPPQEEFKS |
Ga0071350_10371952 | F004974 | N/A | VTSQLAISNKKTRFGPKVASRDWWIDRIKIRKPEIRYWTHYTKYQIAQFKVLAELDYQVLGERIKTEGAPDADLIGRNYPPKLKEQPYWCTLDWKDYKDYRLWTWLQATKALDLPITEKAETWYNYFSIEGNQIRAKELLDPFRKENKKPFDIILEDEYNLVYPTARRICSIHYEVPDQDPFEDLEINTHLQDSRLLPVTSAGDTISRDFIKQYLEERLQEYLALGGLKELLDRRALILAEQKLPAPFYWDLWGNLEHLRGTYAQWLQEHLFDIPNDDEEQEVDSDSDISWESN* |
⦗Top⦘ |