Scaffold Ga0071350_1036163

Overview

Basic Information

• Taxon OID: 3300005069
• Scaffold ID: Ga0071350_1036163
• Source Dataset Name: Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1336
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.611214
  • Long. (^o): 163.119356

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047014	Metagenome / Metatranscriptome	150	Y
F057882	Metagenome / Metatranscriptome	135	N
F101040	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071350_10361631	F047014	AGG	MSFQVNEARNQWIRYLINFTEVWGKIIEAKKGKEAEQHCAKIINIIQKLKKLDPQWQLENSASEREQAPVQYNSKNNNHMLQGA*
Ga0071350_10361632	F057882	GAG	MSCGNNLKEFDHPEYGILDPSQVRELRDELTRDFIDSIGSLSSHLNEKETLDIKDQNTRFHFIRVCTIIKDLNEINPGWCLRYFAPDGECLKIKLHDCSCCYHTCQGPNKVIQSPKSNNNKSSQTEDRGLTQK*
Ga0071350_10361633	F101040	AGGA	MNTEFFRARLEEVRNNLALTRVDKRKTLENLLERNLTQELKEVLRNNLSLLIQAEEKYLELERQYEILIRCGRH*