Scaffold Ga0071350_1033403

Overview

Basic Information

• Taxon OID: 3300005069
• Scaffold ID: Ga0071350_1033403
• Source Dataset Name: Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1378
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.611214
  • Long. (^o): 163.119356

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007918	Metagenome / Metatranscriptome	342	Y
F008991	Metagenome / Metatranscriptome	324	N
F057096	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071350_10334031	F007918	N/A	MSETTLEESDPFLKQELEEIKQELLSILANVESVTEAMNRTILKEEDRREQFRTLCSLINHSFGENIEMIEKRKDDLKEIDPSLQAIDCKLSTRMERLRNVAIQPDLKNMKIGMRRVLSQQEIEKFQTNPQQEEQRPQKG*
Ga0071350_10334032	F057096	AGG	MLFVTKAHVQAWITSLKHQIDIAGDCEICDLEKILGEESLEIAEAVKVALSNRNEETRSRVLRGLLEKTTTKIEALSVRASQAPQP*
Ga0071350_10334033	F008991	N/A	MNLTVRITEQVKKKLDVVLKGKYDNRTIWMYYKVSLQMLRDILEDLIACHHTTHSLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLDRLLSKLIKDKAENLVEALTEENPSDRMTTLSILQMSIQMALFTEIQQLLKSPIVIQFCEENGWAV*