NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0071350_1017748

Scaffold Ga0071350_1017748


Overview

Basic Information
Taxon OID3300005069 Open in IMG/M
Scaffold IDGa0071350_1017748 Open in IMG/M
Source Dataset NameMetagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1755
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.611214Long. (o)163.119356Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057882Metagenome / Metatranscriptome135N
F063335Metagenome / Metatranscriptome129N
F101040Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0071350_10177481F057882N/AYGILDPAQVGELRDELTRCFIDYIGGLSNHLKEKETLDIKDQTTRFHFIRVCTIIKDLNEIDPGWCLRYFAPDDECLKIKLHDCKCCYHTCQSPDKVTQSPKSNSNKSSQVKDKESTQE*
Ga0071350_10177482F101040AGGAGMNTEFFRARLEEVKSNLELTRVDKRKTLENLLERNLTQELKEVLRNNLSLLLQAEEKYLELQRQYEILIQCGRH*
Ga0071350_10177485F063335N/AMERQKVEELQKVKEERLALERAVMQICSSSPHPEWLGLTLIKNYHFIEAINKLVRKEKALTAEISHETKEHEGNK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.