Basic Information | |
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Taxon OID | 3300005069 Open in IMG/M |
Scaffold ID | Ga0071350_1013226 Open in IMG/M |
Source Dataset Name | Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1965 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Fryxell, Antarctica | |||||||
Coordinates | Lat. (o) | -77.611214 | Long. (o) | 163.119356 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F017597 | Metagenome / Metatranscriptome | 239 | N |
F019778 | Metagenome / Metatranscriptome | 227 | N |
F024477 | Metagenome / Metatranscriptome | 205 | Y |
F039941 | Metagenome / Metatranscriptome | 162 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0071350_10132261 | F019778 | N/A | MSLDTASQIELIFLYIGESRLIKRISNEILLILHEDAKGVNTTKMKESLQFKIRGRLSYLYHLAMSTIREEAMYASALYTQLNNLLAVLSLADKTIAIKLITKVCSAYRSSNEIAQITAQTSNNIEKMEIG* |
Ga0071350_10132262 | F017597 | N/A | MRKTLRSEKLLIKLAIKRKELIKTTKSSRLTLITVERITRVLITALKVKQVIAIRFQVNILNNLQVWGKSCHVMN* |
Ga0071350_10132263 | F024477 | N/A | MESRLFSYDTVKESSKAFSFEVFVKNIALIEKVDDLCKRLDQITSYRFNYYGEPDPDIYYMKDIIKIRLMELEKLQIQKVNKLIADLNEEDSKVRKVVN* |
Ga0071350_10132265 | F039941 | GGA | MDIETLTFRLEEIRSSRIEILEEKKTLAEELLARGLIVEIKEGILENMSLLIQLDLTLNNIEIIYENLIECRILHARYKQQSS* |
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