NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071350_1009706

Scaffold Ga0071350_1009706


Overview

Basic Information
Taxon OID3300005069 Open in IMG/M
Scaffold IDGa0071350_1009706 Open in IMG/M
Source Dataset NameMetagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2216
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.611214Long. (o)163.119356Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000441Metagenome / Metatranscriptome1136Y
F012013Metagenome / Metatranscriptome284Y
F024786Metagenome / Metatranscriptome204Y
F069753Metagenome / Metatranscriptome123Y
F092053Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0071350_10097061F092053AGGMKIKISKDHMEELDDQACQIVYFEGQMSNEDKAIKGVTKRLVEIYKVAYEAGVNSK*
Ga0071350_10097062F000263AGGAGMIPNTLELPAHLQRMVNAGVSGLDIMHGELKNLMLIAEQDLASALEQEALSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARDDN*
Ga0071350_10097063F012013GGAGMTIDLQEATRRDDVYRDLNEIVDKITVLPVFPSLVWVWSFDVLRSIYENNRFEDLAVNDYVDEAVPAGITLKQVFDKFWEDADGIGISMDLGDEIIDETIRDWMRDNDFLVALDKDGWLDDEEEEDADE*
Ga0071350_10097064F000441AGGAGGMSDIYINEQLNKAQKLLWGGSETENIEAHNIIAKLIKDRLGNDE*
Ga0071350_10097067F024786GGAGLPAFRVFGNKYQNYYTIIEAADQFEAVDLANALPETEWDSIPTDDVIEATDVYLNEDTSLDLQLNI*
Ga0071350_10097069F069753AGGCGGMKTKEQQIAELLCNYSEDHFFNPASLGGFLADQPTYTLDRIMEVVAWVIEKQARRYEREIENGGMVSEGLAIAYKLDQVIDKIKDKNTFNNVKLPITN
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