Scaffold Ga0071350_1003491

Overview

Basic Information

• Taxon OID: 3300005069
• Scaffold ID: Ga0071350_1003491
• Source Dataset Name: Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3325
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.611214
  • Long. (^o): 163.119356

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002071	Metagenome / Metatranscriptome	596	Y
F002245	Metagenome / Metatranscriptome	578	Y
F003663	Metagenome / Metatranscriptome	474	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071350_10034914	F002245	AGG	MSNLMKVPHTVVFEAIIDLDKIPANLLPALINLPQSEIEKMCKGATIHALGMSNTLEVANENNTWAELTVKGNI*
Ga0071350_10034915	F003663	GGA	MLSTAIEILDATKSSIFDEDIMGLAGELHTRRNELSDEIYAKYLFMYSSALSAKVADSITKILLTEQEMSDLVATIDEMDDLSETILEENE*
Ga0071350_10034917	F002071	AGGA	MTTLEIGNTITTAKSGVVGVIKAVDNHPSGVARVLLDVNGSERWTSVEV*