Scaffold Ga0071350

Basic Information
Taxon OID	3300005069 Open in IMG/M
Scaffold ID	Ga0071350_1002367 Open in IMG/M
Source Dataset Name	Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300005069 Open in IMG/M

Scaffold ID

Ga0071350_1002367 Open in IMG/M

Source Dataset Name

Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3842
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3842

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Fryxell, Antarctica
Coordinates	Lat. (^o)	-77.611214	Long. (^o)	163.119356	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Fryxell, Antarctica

Coordinates

Lat. (^o)

-77.611214

Long. (^o)

163.119356

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016494	Metagenome / Metatranscriptome	246	N
F019949	Metagenome / Metatranscriptome	226	N
F024962	Metagenome / Metatranscriptome	203	N
F028417	Metagenome / Metatranscriptome	191	N
F031075	Metagenome / Metatranscriptome	183	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0071350_10023672	F019949	N/A	MYQEKNRYSKRILRFADDLLYNNLTVEDEANKEILKTEIEKYVDEPVVFRLAFKAFKIEMQEIKLLRLIEKLLHTVDKMHSLSPLQKARKFSKIYELKQKITQINPNWKISDSFHLKKYKILTLIDRINVKEEYNSVANEEIYQQLINEVETAKRTNSTWQLDKELIIIKKSE*
Ga0071350_10023673	F028417	GAG	MATNESLDNKRQLVTLMLQTIENFVPLETKPAPEGMAIYLYELKKEIIRQDSKFKFINPYNDYIFRVLTLLDYLDVSKEYDTESHGKTVHMICRETRDIKRIDPSWKINPTSIIEFINSTSLASARK*
Ga0071350_10023674	F016494	N/A	MSQKGNNSEGITVDNFTELGQLIRSTLQTVDELFPPKPEFSFEDMMVQFHTLKSRIKKIDPSWKFENTDISYVFEILKLLDAVNVEEIPDLQQNAKVCQRLLHRVRIMKQINPSWSLDVESIIKFLYPTLNTQLSEEQTPLREQIQFQ*
Ga0071350_10023676	F031075	N/A	MSQEKSTAVSEATNRKENSKDCGHEVNACTCPPSKEYEKYTKIRALTHLIGLINFMPPFDAPISYGPLERIWNFKKQIREMDPNWLLADEITLLEHQVLNQIDVIDINVPWNSARNKLRYIDLHQTITKLRTIHPDWQMYLEDSKNHHFCKCCSCSEIKRRYQEELDATSSEELSSEEENGK*
Ga0071350_10023677	F024962	GAGG	MKILRSIIKEQVENKIDPILKEKYQENIAVKLFRASIEIIRESVDRITEMYYFDYPQHEKEDFVKEVELHVFEWKSKIQKRSDEENITGLDHLLSSKVIDTLEEYLEALEETDIDKRQSKLYHVDGFAAVWNHRKIEDIIRHPWSVELCRRNNWLAEMPKDN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0071350_1002367

Overview

Ecosystem & Geography

Associated Families

Sequences