Scaffold Ga0071350_1000004

Overview

Basic Information

• Taxon OID: 3300005069
• Scaffold ID: Ga0071350_1000004
• Source Dataset Name: Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40619
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (86.89%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.611214
  • Long. (^o): 163.119356

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017454	Metagenome / Metatranscriptome	240	Y
F029387	Metagenome / Metatranscriptome	188	Y
F054788	Metagenome / Metatranscriptome	139	Y
F060847	Metagenome / Metatranscriptome	132	Y
F062686	Metagenome / Metatranscriptome	130	Y
F073460	Metagenome / Metatranscriptome	120	N
F074788	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0071350_100000415	F073460	GGAGG	MLQSINAIANALICLGGLAFYVMLFTKIGDGVKQIDQFGKVSYHLIRTGLAFIVAGALFNVLLLTTPPASEVLMNLGFGLVLSWAAVWHGKKFGVITGVKAIDRKTGTYRVPQ*
Ga0071350_100000425	F029387	GGAG	MARERLADAQPRMDGGLNSVSDDISLQPNQLRQTVNMRLTDYGAASKRGGTQRTSTAALAAASVLNGYTFQQDSGTNQILAISNTDLFTTTYGAFPLTYTNQGGTFSTTVAPDFAQFRDGSGTDVVYIADGGLLNKWTGTTLTSDIAGTVAVDTIQVHNQRLWGCGNSSFPDSIFYSSLNNGDDLGNATPPAGGGQIIVRTFGDERIVGLASVNTSLLIFHRRGISRLTGYGQDDIVAAPAGLTADVGTIAAKSIVANNNIAYFISERGLYRCNESEVAAVGTPTKPDPILPIIRQLSSSDFDKIRAVINRATKELWITIPGYGCYQYHTVLDAWSGPWNGAYISPDTTALFETINTSGLPVVLRGDASGWVSLCDAPGVNKDNVAAAGTGGDVYTMVAQFHRQYMGDPALAKALRWGYLTAQLNGSQSCSVSWTTDEATGAYQLPTNTGGVWSTSATWGTGAWSGPKSRNFRVPMGGTGYFLDVTITDAGTALPVFSQWQTETFALGRR*
Ga0071350_100000426	F054788	N/A	VAVTKAQLIALTRETMDAVASDRWSDATITTVLSSVYGDEWSNILNAQPYYTFAKRTVTTDGDGMVSFSALSSGSGDSQQNFYRVLSVSDGNVLYTQTRFQDVPLATTTNYLPTYPRLFYTAGQALQILPVAASTTLYVYVNYKPTAFNQLATDSSVIDFPDGGELILANEAGASLLNKGGAESGAARVLREEAQLSRTLLLDDLRRYTIQPTMMAYPDQKYDWSGG*
Ga0071350_100000427	F060847	AGGAG	VTVLLNAAGQPEPPTHVVARLRALHAGLFMKFLEQTGEHWAICLRWSPEDTRWEWVQRGETDPEMAYDIIGYLPMLCSIDEAPAYLERTFRQYPKDEVRRMADFVEQFNATQPIGQAADAALTEVLDTL*
Ga0071350_100000432	F062686	GGA	VSLVIHSLWAAVAVYFVHTAAGVVREFKAAPVAPVLPPPVEIPEDLVAVANQEREPWAQEEVLRSIRERYEDLRDWNRVRSAFGVGRIG*
Ga0071350_100000458	F074788	N/A	MPSPRWDDPESFGPHLPKDYNARGVFAEGPQPPSNPLGRLQSGRGADAGRQALPANVARVVLSREGRSRGRLKLALFVHKPKPPARAVITSVHNDPTE*
Ga0071350_100000461	F017454	GGAGG	MSHNIDLPRHRYVHVIEAAVHRGGAKDKTIPCVWWGMSATPGRMFGCHILLESGAMVVDLPLHALRHQADATQLWTCDKAQRWDAYGWHVEAHEPAYLTGLDCRVLTDDHKHVAYLGELWFLLDHVSDGYSLEPAQHKHHWVVALDDGTFTCVPQDQVIVTEKSFTKFGGIPPIKRQTRVWSCE*