NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070769_1198697

Scaffold Ga0070769_1198697


Overview

Basic Information
Taxon OID3300005068 Open in IMG/M
Scaffold IDGa0070769_1198697 Open in IMG/M
Source Dataset NameMicrobial Community from Halfdan Field MHDA13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterShell Corporation
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)500
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location NameNorth Sea, Denmark
CoordinatesLat. (o)55.49Long. (o)7.42Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027047Metagenome196Y
F094638Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0070769_11986971F094638AGAAGMSDGSNEVVRELTKLSTKMDMVCADVSELKIMTRNFLERLTILEERVRSLEDWKDEVTNYDRLKEQVKYDFRSAVAGGVAGGLVGVVGSYL
Ga0070769_11986972F027047N/AYVKKHLNSDNPQDFDAAKFVTTVIWGAIVGVVLQYTGVEITEQTVEEQFAIYTGLIAITENIIKAIIRAIKK*

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