NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0070767_1135147

Scaffold Ga0070767_1135147


Overview

Basic Information
Taxon OID3300005067 Open in IMG/M
Scaffold IDGa0070767_1135147 Open in IMG/M
Source Dataset NameMicrobial Community from Halfdan Field MHDA5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterShell Corporation
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)842
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Water → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location NameNorth Sea, Denmark
CoordinatesLat. (o)55.49Long. (o)7.42Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004971Metagenome416Y
F076711Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0070767_11351471F004971AGGGGGMSTKERMVELIEIGNLDVYEDGWFEALKALAVRKISEATGEPCEVAMGFCNADEALHVVTASGRVFCVCYADVLDVSAVEEVQCPRCGCHIPVDMLEEHEELCSE*
Ga0070767_11351472F076711AGGAGGVGIGWAHCPICGRRFEGSYFPDTNVNTAVYAVERHTILRHHKKITPGGVADAKVPDDFIRASEMKTWFAGGTGNIHLKGNACISCVCGRFFVVDFEEFYYNGKNIKVIVREFDDIGRYKKITEKKEVIYVGYVDVHKFE
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