Scaffold Ga0070450_1520845

Overview

Basic Information

• Taxon OID: 3300005064
• Scaffold ID: Ga0070450_1520845
• Source Dataset Name: Compost microbial communities from Sao Paulo Zoo, Brazil - Zoo Compost 4 - DAY 01 soap2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Center for Advanced Technologies in Genomics, Sao Paulo University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 614
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. CAG:74_58_120 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Zoo Waste → Composting → Unclassified → Compost → Compost Microbial Communities From Sao Paulo Zoo, Brazil

Source Dataset Sampling Location

• Location Name: Sao Paulo Zoo, Brazil
• Coordinates
  • Lat. (^o): -23.651072
  • Long. (^o): -46.620675

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078046	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070450_15208451	F078046	GGAG	MFDMSADCVQNVFEQLKDRYELVLTSAAALDEGFTVDCPILVGKAHGQIVELYEAGGEFVLDVMDAEQTKGTHWHPYDVKDAAHDIAEFMEGKSDYVLSPFPKA*