Scaffold Ga0068511_1047031

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068511_1047031

Scaffold Ga0068511_1047031

Overview

Basic Information
Taxon OID	3300005057 Open in IMG/M
Scaffold ID	Ga0068511_1047031 Open in IMG/M
Source Dataset Name	Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	701
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location Name	East Sea, Korea
Coordinates	Lat. (^o)	37.0	Long. (^o)	131.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008210	Metagenome / Metatranscriptome	337	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068511_10470311	F008210	N/A	LKLTQVQGVVSVRGTADTGTIDISSTLKKSTETQSSPTVNINGLHWTLSSGASAKVQRNSVVLYELMESGSLDMYGYSDNSENTSDIEIVIAGGAGGTVIVDCAKISGYGSQQHQDAPLDTNDSGNVYNGGSLG*

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