Basic Information | |
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Taxon OID | 3300005057 Open in IMG/M |
Scaffold ID | Ga0068511_1014371 Open in IMG/M |
Source Dataset Name | Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1090 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles |
Source Dataset Sampling Location | ||||||||
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Location Name | East Sea, Korea | |||||||
Coordinates | Lat. (o) | 37.0 | Long. (o) | 131.0 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005537 | Metagenome / Metatranscriptome | 397 | Y |
F008307 | Metagenome / Metatranscriptome | 335 | Y |
F043149 | Metagenome / Metatranscriptome | 157 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0068511_10143712 | F043149 | GAGG | MSLRNSNIRLYTKLDKAHKKIMGAKENGRQCVHTLQNFKEYNQLFRRIVEAENKDARFLYT* |
Ga0068511_10143713 | F008307 | AGCAG | MTKVIKTSSIELAADFEEIFDGANVEEATKKAYDQKMPSEFAKVNITEHKLVSANIKVIGEVNDELKK* |
Ga0068511_10143715 | F005537 | N/A | KVIMSDNVKFISEIERLLKQKQNDYGHFDHTSYVMVGIMEKYLSIHNNQDVKIPLKFFGLFMILLKSWRIMQSKNYTKDSFDDINGYTELLRRLVIDENKNK* |
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