Scaffold Ga0068511_1014371

Overview

Basic Information

• Taxon OID: 3300005057
• Scaffold ID: Ga0068511_1014371
• Source Dataset Name: Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1090
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: East Sea, Korea
• Coordinates
  • Lat. (^o): 37.0
  • Long. (^o): 131.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005537	Metagenome / Metatranscriptome	397	Y
F008307	Metagenome / Metatranscriptome	335	Y
F043149	Metagenome / Metatranscriptome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068511_10143712	F043149	GAGG	MSLRNSNIRLYTKLDKAHKKIMGAKENGRQCVHTLQNFKEYNQLFRRIVEAENKDARFLYT*
Ga0068511_10143713	F008307	AGCAG	MTKVIKTSSIELAADFEEIFDGANVEEATKKAYDQKMPSEFAKVNITEHKLVSANIKVIGEVNDELKK*
Ga0068511_10143715	F005537	N/A	KVIMSDNVKFISEIERLLKQKQNDYGHFDHTSYVMVGIMEKYLSIHNNQDVKIPLKFFGLFMILLKSWRIMQSKNYTKDSFDDINGYTELLRRLVIDENKNK*