Scaffold Ga0068511_1003357

Overview

Basic Information

• Taxon OID: 3300005057
• Scaffold ID: Ga0068511_1003357
• Source Dataset Name: Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1814
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location

• Location Name: East Sea, Korea
• Coordinates
  • Lat. (^o): 37.0
  • Long. (^o): 131.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008851	Metagenome / Metatranscriptome	327	Y
F026125	Metagenome / Metatranscriptome	199	N
F075329	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068511_10033571	F008851	AGTAGG	MKKFKVIENYSTTEGTLYKGEVLKEDDNNTLDGHKRLKDSMGRVWFIPFKYIVRI*
Ga0068511_10033573	F026125	AGGAG	MFNYINSWKSRKSEKWNIEVRLGRITLLQLNYDAKKAKFRFMLLNFGLEIGGK*
Ga0068511_10033575	F075329	GAGG	MNRRALSDFEKYILVSEHSKYALGTYPNFLKLKELMSTLNQMVSKNNNTYTYYGEVYVSNLTGPEINKIQDCLDTGKWTSSFDKIKHICVDLGISRF*